bioc-issue-bot
commented
2 years ago Hi @RMalinverni
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: regioneReloaded
Type: Package
Title: RegioneReloaded: Multiple Association for Genomic Region Sets
Version: 0.99.0
Authors@R: c(
person(given = "Roberto",
family = "Malinverni",
role = c("aut", "cre"),
email = "roberto.malinverni@gmail.com",
comment = c(ORCID ="0000-0002-0113-3417")),
person(given = "David",
family = "Corujo",
role = c("aut"),
email = "dcorujo@carrerasresearch.org"),
person(given = "Bernat",
family = "Gel",
role = c("aut"),
email = "bgel@igtp.org"))
URL: https://github.com/RMalinverni/regioneReload
Description: RegioneReloaded is a package that allows simultaneous analysis of associations between genomic region sets, enabling clustering of data and the creation of ready-to-publish graphs. It takes over and expands on all the features of its predecessor regioneR. It also incorporates a strategy to improve p-value calculations and normalize z-scores coming from multiple analysis to allow for their direct comparison. RegioneReloaded builds upon regioneR by adding new plotting functions for obtaining publication-ready graphs.
License: Artistic-2.0
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.2.1
Roxygen: list(markdown = TRUE)
Depends:
R (>= 4.2),
regioneR
Imports:
stats,
RColorBrewer,
Rtsne,
GenomicRanges,
umap,
ggplot2,
ggrepel,
reshape2,
methods,
scales,
cluster,
grid,
grDevices
Suggests:
rmarkdown,
knitr,
testthat (>= 3.0.0)
biocViews: Genetics, ChIPSeq, DNASeq, MethylSeq, CopyNumberVariation, Clustering
VignetteBuilder: knitr
Config/testthat/edition: 3
jianhong
RMalinverni
lshep
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