bioc-issue-bot
commented
2 years ago Hi @jsun
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The DESCRIPTION file for this package is:
Package: CircSeqAlignTk
Type: Package
Title: A toolkit for end-to-end analysis of RNA-seq data for circular genomes
Version: 0.99.0
Authors@R:
c(person("Jianqiang", "Sun", , "sun@biunit.dev", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-3438-3199")),
person("Xi", "Fu", , role = c("aut")),
person("Wei", "Cao", role = c("aut")))
Description:
CircSeqAlignTk is an R package for end-to-end analysis,
from alignment to visualization,
of RNA-seq data obtained from organelles or organisms
with circular genome sequences,
such as bacteria, viruses, and viroids.
In addition, CircSeqAlignTk implements a tidy interface
to generate synthetic sequencing data that mimic real RNA-seq data,
allowing developers to evaluate the performance of alignment tools,
new alignment algorithms, and new workflows.
Depends: R (>= 4.2)
Imports:
stats,
tools,
utils,
methods,
S4Vectors,
rlang,
magrittr,
dplyr,
tidyr,
ggplot2,
BiocGenerics,
Biostrings,
IRanges,
ShortRead,
Rsamtools,
Rbowtie2,
Rhisat2
Suggests:
knitr,
rmarkdown,
R.utils,
BiocStyle
VignetteBuilder: knitr
biocViews: Sequencing, SmallRNA, Alignment, Software
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.0
URL: https://github.com/jsun/vsrnaseqtk
BugReports: https://github.com/jsun/vsrnaseqtk/issues
vjcitn
jsun
Kayla-Morrell
lshep
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