bioc-issue-bot
commented
1 year ago Hi @lptolik
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: BioNAR
Title: Biological Network Analysis in R
Version: 0.99.001
Authors@R: c(
person("Colin", "Mclean",
email="Colin.D.Mclean@ed.ac.uk", role="aut"),
person("Anatoly", "Sorokin",
email="lptolik@gmail.com", role=c("aut", "cre")),
person("Oksana", "Sorokina",
email="oksana.sorokina@ed.ac.uk", role="aut"),
person("J. Douglas", "Armstrong",
email="Douglas.Armstrong@ed.ac.uk", role = "aut") )
Description: the R package BioNAR, developed to step by step analysis of PPI
network. The aim is to quantify and rank each protein’s simultaneous
impact into multiple complexes based on network topology and
clustering. Package also enables estimating of co-occurrence of
diseases across the network and specific clusters pointing towards
shared/common mechanisms.
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.1
Depends: igraph, poweRlaw, org.Hs.eg.db, latex2exp, RSpectra, rSpectral, WGCNA, ggplot2, Rdpack
Imports: stringr, synaptome.db, clusterCons, fgsea, grid, methods, scales, AnnotationDbi
RdMacros: Rdpack
Suggests:
knitr,
rmarkdown,
igraphdata,
testthat (>= 3.0.0),
devtools, ggrepel, pander, plotly, randomcoloR
Config/testthat/edition: 3
VignetteBuilder: knitr
biocViews: Software, GraphAndNetwork, Network
vjcitn
DarioS
lptolik
lshep
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