bioc-issue-bot
commented
1 year ago Hi @almeidasilvaf
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: planttfhunter
Title: Identification and classification of plant transcription factors
Version: 0.99.0
Date: 2022-03-10
Authors@R:
c(
person(given = "Fabrício",
family = "Almeida-Silva",
role = c("aut", "cre"),
email = "fabricio_almeidasilva@hotmail.com",
comment = c(ORCID = "0000-0002-5314-2964")),
person(given = "Yves",
family = "Van de Peer",
role = "aut",
email = "yves.vandepeer@psb.vib-ugent.be",
comment = c(ORCID = "0000-0003-4327-3730"))
)
Description: planttfhunter is used to identify plant transcription factors (TFs)
from protein sequence data and classify them into families and subfamilies
using the classification scheme implemented in PlantTFDB.
TFs are identified using pre-built hidden Markov model profiles
for DNA-binding domains. Then, auxiliary and forbidden domains are
used with DNA-binding domains to classify TFs into families and
subfamilies (when applicable). Currently, TFs can be classified in
58 different TF families/subfamilies.
License: GPL-3
URL: https://github.com/almeidasilvaf/planttfhunter
BugReports: https://support.bioconductor.org/t/planttfhunter
biocViews: Software,
Transcription,
FunctionalPrediction,
GenomeAnnotation,
FunctionalGenomics,
HiddenMarkovModel,
Sequencing,
Classification
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.0
SystemRequirements: HMMER <http://hmmer.org/>
Imports:
Biostrings,
SummarizedExperiment,
utils,
methods
Suggests:
BiocStyle,
covr,
sessioninfo,
knitr,
rmarkdown,
testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends:
R (>= 4.2.0)
LazyData: false
almeidasilvaf
lazappi
lshep
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