bioc-issue-bot
commented
1 year ago Hi @RC-88
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The DESCRIPTION file for this package is:
Package: CaDrA
Type: Package
Title: Candidate Driver Analysis
Version: 0.99.0
Date: 2022-04-25
Authors@R:
c(person(given="Reina", family="Chau", role=c("aut","cre"), email="rchau88@bu.edu"),
person(given="Katia", family="Bulekova", role=c("aut"), email="ktrn@bu.edu", comment=c(ORCID="0000-0003-1560-2146")),
person(given="Vinay", family="Kartha", role=c("aut"), email="vkartha@bu.edu"),
person(given="Stefano", family="Monti", role=c("aut"), email="smonti@bu.edu", comment=c(ORCID="0000-0002-9376-0660"))
)
Description: Performs both stepwise and backward heuristic search for candidate (epi)genetic drivers based on a binary multi-omics dataset. CaDrA's main objective is to identify features which, together, are significantly skewed or enriched pertaining to a given vector of continuous scores (e.g. sample-specific scores representing a phenotypic readout of interest, such as protein expression, pathway activity, etc.), based on the union occurence (i.e. logical OR) of the events.
Depends: R (>= 4.0.0)
LazyData: false
License: GPL-3 + file LICENSE
URL: https://github.com/montilab/CaDrA/
Packaged: 2017-07-10 18:44:45 UTC;
Encoding: UTF-8
RoxygenNote: 7.2.1
Imports:
Biobase,
doParallel,
plyr,
ggplot2,
grid,
gplots,
gtable,
R.cache,
reshape2,
magrittr,
purrr,
stats,
methods,
MASS,
misc3d,
ppcor,
graphics
Suggests:
BiocStyle,
devtools,
rmarkdown,
knitr,
testthat (>= 3.0.0)
Config/testthat/edition: 3
biocViews: Microarray, RNASeq, GeneExpression, Software, FeatureExtraction
VignetteBuilder: knitr
BugReports: https://github.com/montilab/CaDrA/issues
LiNk-NY
RC-88
lshep
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