bioc-issue-bot
commented
1 year ago Hi @rx-li
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: partCNV
Type: Package
Title: Infer locally aneuploid cells using single cell RNA-seq data
Version: 0.99.0
Authors@R: c(
person(given="Ziyi", family="Li", email="zli16@mdanderson.org", role=c("aut", "cre", "ctb")),
person(given="Ruoxing", family="Li", email="ruoxingli@outlook.com", role="ctb"))
Description: This package uses a statistical framework for rapid and accurate detection of aneuploid cells with local copy number deletion or amplification. Our method uses an EM algorithm with mixtures of Poisson distributions while incorporating cytogenetics information (e.g., regional deletion or amplification) to guide the classification (partCNV). When applicable, we further improve the accuracy by integrating a Hidden Markov Model for feature selection (partCNVH).
Imports: stats, data.table, depmixS4, Seurat, Matrix, GenomicRanges
Suggests: BiocStyle, rmarkdown, knitr, IRanges
VignetteBuilder: knitr
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.1
biocViews: Software, CopyNumberVariation, HiddenMarkovModel
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rx-li
ococrook
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