bioc-issue-bot
commented
1 year ago Hi @js2264
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: HiCExperiment
Title: Interface to Hi-C files in R
Version: 0.99.0
Date: 2022-11-10
Authors@R:
c(person(given = "Jacques",
family = "Serizay",
role = c("aut", "cre"),
email = "jacquesserizay@gmail.com",
comment = c(ORCID = "0000-0002-4295-0624")))
Description: R interface to (m)cool files and other Hi-C processed file formats.
`.(m)cool`, `.hic`, HiC-Pro generated files and `.pairs` files can be
directly parsed and subsetted to create HiCExperiment objects,
allowing a memory-efficient representation of Hi-C data in R.
License: MIT + file LICENSE
URL: https://github.com/js2264/HiCExperiment
BugReports: https://github.com/js2264/HiCExperiment/issues
Depends:
R (>= 4.2)
Imports:
InteractionSet,
GenomicInteractions,
strawr,
GenomicRanges,
IRanges,
GenomeInfoDb,
S4Vectors,
BiocGenerics,
BiocIO,
methods,
rhdf5,
Matrix,
vroom,
tibble,
tidyr,
dplyr,
glue,
stringr
Suggests:
HiContactsData,
testthat (>= 3.0.0),
BiocStyle,
knitr,
rmarkdown
biocViews:
HiC,
DNA3DStructure,
DataImport
Encoding: UTF-8
VignetteBuilder: knitr
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Config/testthat/edition: 3
Collate:
'AllGenerics.R'
'PairsFile-class.R'
'HiCExperiment-class.R'
'ContactsFile-class.R'
'ContactsFile-methods.R'
'CoolFile-class.R'
'CoolFile-methods.R'
'HiCExperiment-methods.R'
'HicFile-class.R'
'HicFile-methods.R'
'HicproFile-class.R'
'HicproFile-methods.R'
'PairsFile-methods.R'
'checks.R'
'data.R'
'globals.R'
'import-methods.R'
'parse-cool.R'
'parse-hic.R'
'parse-hicpro.R'
'parse-other.R'
'parse-pairs.R'
'utils.R'
js2264
vjcitn
DarioS
lshep
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