bioc-issue-bot
commented
1 year ago Hi @Ylefol
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: TimeSeriesAnalysis
Type: Package
Title: Transcriptomic TimeSeries (longitudinal) analysis
Version: 0.99.0
Authors@R: person("Yohan", "Lefol", email = "yohan.lefol@gmail.com",
role = c("aut", "cre"))
Description: An pipeline to analyse and interpret longitudinal transcriptomic data from both RNAseq and microarray orgigins. The pipeline performs differential gene expression, clustering, and plots usefull figures to aid in interpretation of identified clusters of differentially expressed genes.
License: MIT
VignetteBuilder: knitr
Imports:
stringr,
DESeq2,
limma,
grid,
ggrepel,
ggplot2,
ComplexHeatmap,
reshape2,
tibble,
dplyr,
gprofiler2,
tictoc,
GOSemSim,
plotly,
GO.db,
data.table,
htmltools,
dynamicTreeCut,
stringi,
rstudioapi,
AnnotationDbi,
BiocGenerics,
GenomicRanges,
RColorBrewer,
grDevices,
htmlwidgets,
stats,
utils
Depends:
R (>= 4.1)
Suggests: knitr,
rmarkdown,
URL: https://github.com/Ylefol/TimeSeriesAnalysis
LazyData: true
biocViews: Sequencing, RNASeq, Microarray, GeneExpression, Transcription,
Normalization, DifferentialExpression, Clustering, Regression,
PrincipalComponent
RoxygenNote: 7.2.3
Encoding: UTF-8
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Ylefol
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DarioS
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