bioc-issue-bot
commented
1 year ago Hi @dxd429
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: magpie
Type: Package
Title: MeRIP-Seq data Analysis for Genomic Power Investigation and Evaluation
Version: 0.99.0
Authors@R: c(person(given = "Daoyu",
family = "Duan",
role = c("aut", "cre"),
email = "dxd429@case.edu"),
person(given = "Zhenxing",
family = "Guo",
role = c("aut"),
email = "guozhenxing@cuhk.edu.cn"))
Description: This package aims to perform power analysis for the MeRIP-seq study. It calculates FDR, FDC,
power, and precision under various study design parameters, including but not limited to
sample size, sequencing depth, and testing method. It can also output results into .xlsx files or
produce corresponding figures of choice.
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: Epitranscriptomics, DifferentialMethylation, Sequencing, RNASeq, Software
RoxygenNote: 7.2.1
Imports:
utils,
rtracklayer,
Matrix,
matrixStats,
stats,
S4Vectors,
methods,
graphics,
GenomicRanges,
GenomicFeatures,
IRanges,
Rsamtools,
AnnotationDbi,
aod,
BiocParallel,
DESeq2,
openxlsx,
RColorBrewer,
reshape2,
TRESS
Depends: R (>= 4.1.0)
Suggests:
knitr,
rmarkdown,
kableExtra
VignetteBuilder: knitr
URL: https://github.com/dxd429/magpie
BugReports: https://github.com/dxd429/magpie/issues
lshep
dxd429
ococrook
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