bioc-issue-bot
commented
1 year ago Hi @multimeric
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Type: Package
Package: CuratedAtlasQueryR
Title: Queries the Human Cell Atlas
Version: 0.99.1
Authors@R: c(
person(
"Stefano",
"Mangiola",
email = "mangiolastefano@gmail.com",
role = c("aut", "cre", "rev")
),
person(
"Michael",
"Milton",
email = "milton.m@wehi.edu.au",
role = c("aut", "rev")
),
person(
"Martin",
"Morgan",
email = "Martin.Morgan@RoswellPark.org",
role = c("ctb", "rev")
),
person(
"Vincent",
"Carey",
email = "stvjc@channing.harvard.edu",
role = c("ctb", "rev")
),
person(
"Julie",
"Iskander",
email = "iskander.j@wehi.edu.au",
role = c( "rev")
),
person(
"Tony",
"Papenfuss",
email = "papenfuss@wehi.edu.au",
role = c( "rev")
),
person(
"Silicon Valley Foundation",
"CZF2019-002443",
role = c( "fnd")
),
person(
"NIH NHGRI",
"5U24HG004059-18",
role = c( "fnd")
),
person(
"Victoria Cancer Agnency",
"ECRF21036",
role = c( "fnd")
),
person(
"NHMRC",
"1116955",
role = c( "fnd")
))
Description: Provides access to a copy of the Human Cell Atlas, but with
harmonised metadata. This allows for uniform querying across numerous
datasets within the Atlas using common fields such as cell type, tissue
type, and patient ethnicity. Usage involves first querying the metadata
table for cells of interest, and then downloading the corresponding cells
into a SingleCellExperiment object.
License: GPL-3
Depends:
R (>= 4.2.0)
Imports:
dplyr,
SummarizedExperiment,
SingleCellExperiment,
purrr (>= 1.0.0),
BiocGenerics,
glue,
HDF5Array,
DBI,
tools,
httr,
cli,
assertthat,
SeuratObject,
Seurat,
methods,
rlang,
stats,
S4Vectors,
tibble,
utils,
dbplyr (>= 2.3.0),
duckdb,
stringr
Suggests:
zellkonverter,
rmarkdown,
knitr,
testthat,
basilisk,
arrow,
reticulate
Biarch: true
biocViews:
AssayDomain,
Infrastructure,
RNASeq,
DifferentialExpression,
GeneExpression,
Normalization,
Clustering,
QualityControl,
Sequencing,
Transcription,
Transcriptomics
Encoding: UTF-8
RoxygenNote: 7.2.3
LazyDataCompression: xz
URL: https://github.com/stemangiola/CuratedAtlasQueryR
BugReports: https://github.com/stemangiola/CuratedAtlasQueryR/issues
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
Collate:
'utils.R'
'counts.R'
'dev.R'
'metadata.R'
'seurat.R'
'unharmonised.R'
'zzz.R'
multimeric
lshep
vjcitn
LiNk-NY
stemangiola
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