bioc-issue-bot
commented
1 year ago Hi @belleau
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: RAIDS
Type: Package
Title: Accurate Inference of Genetic Ancestry from Cancer Sequences
Description: This package implements specialized algorithms that enable
genetic ancestry inference from various cancer sequences sources (RNA,
Exome and Whole-Genome sequences). This package also implements a
simulation algorithm that generates synthetic cancer-derived data.
This code and analysis pipeline was designed and developed for the
following publication: Belleau, P et al. Genetic Ancestry Inference from
Cancer-Derived Molecular Data across Genomic and Transcriptomic
Platforms. Cancer Res 1 January 2023; 83 (1): 49–58.
Version: 0.99.0
Authors@R: c(person("Pascal", "Belleau", email="pascal_belleau@hotmail.com",
role=c("cre", "aut"), comment = c(ORCID = "0000-0002-0802-1071")),
person("Astrid", "Deschênes", email="adeschen@hotmail.com",
role=c("aut"), comment = c(ORCID = "0000-0001-7846-6749")),
person("Alexander", "Krasnitz", email="krasnitz@cshl.edu",
role=c("aut")))
License: Apache License (>= 2)
Encoding: UTF-8
NeedsCompilation: no
VignetteBuilder: knitr
Depends: R (>= 4.2.0),
gdsfmt,
SNPRelate,
stats,
utils,
GENESIS
Imports: S4Vectors,
GenomicRanges,
ensembldb,
BSgenome,
AnnotationDbi,
methods,
class,
pROC,
IRanges,
AnnotationFilter
Suggests: testthat,
knitr,
rmarkdown,
BiocStyle,
withr,
BSgenome.Hsapiens.UCSC.hg38
BugReports: https://github.com/KrasnitzLab/RAIDS/issues
URL: https://krasnitzlab.github.io/RAIDS/
biocViews: Genetics, Software, Sequencing, WholeGenome
RoxygenNote: 7.2.3
belleau
DarioS
lshep
adeschen
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