bioc-issue-bot
commented
1 year ago Hi @ytakemon
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: GRETTA
Title: Genetic Interaction and Essentiality Mapper
Version: 0.99.0
Authors@R:
c(person(given = "Yuka",
family = "Takemon",
role = c("aut", "cre", "cph"),
email = "yuka.takemon@gmail.com",
comment = c(ORCID = "0000-0002-3538-4409")),
person(given = "Marco",
family = "Marra",
role = c("ths"),
email = "mmarra@bcgsc.ca",
comment = c(ORCID = "0000-0001-7146-7175")))
Description: Genetic inteRaction and EssenTiality mApper, or `GRETTA`, performs in-silico genetic screens and generate essentiality network maps.
To do this, `GRETTA` leverages publicly available data generated by the Cancer Dependency Map (DepMap) project. Users can define versions of DepMap
to analyze, and can also query DepMap data directly from the tool. A pre-print with detailed explanations on `GRETTA` can be found here:
https://doi.org/10.1101/2022.09.21.508787.
biocViews: Genetics, SystemsBiology, Transcriptomics, Proteomics, BiomedicalInformatics, GenePrediction, FunctionalPrediction, GeneTarget, NetworkInference, Network
URL: https://github.com/ytakemon/GRETTA
BugReports: https://github.com/ytakemon/GRETTA/issues
BiocType: Software
Depends:
R (>= 4.2.0)
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.2
Suggests:
knitr,
rmarkdown,
testthat (>= 3.0.0)
Config/testthat/edition: 3
Imports:
dplyr,
magrittr,
forcats,
rlang,
stringr,
utils,
tidyr,
doMC,
broom,
diptest,
parallel,
rcompanion,
foreach,
readr,
tidyselect,
stats,
ggplot2,
ggrepel,
RootsExtremaInflections,
tibble
VignetteBuilder: knitr
ytakemon
vjcitn
Kayla-Morrell
lshep
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