bioc-issue-bot
commented
1 year ago Hi @yuan-yin-truly
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: decontX
Title: Decontamination of single cell genomics data
Version: 0.99.0
Authors@R:
person("Yuan", "Yin", , "yuan_yin@outlook.com", role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-9261-6061"))
Description: This package contains implementation of DecontX (Yang et al. 2020),
a decontamination algorithm for single-cell RNA-seq, and DecontPro (Yin et al.
2023), a decontamination algorithm for single cell protein expression data.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Suggests:
BiocStyle,
dplyr,
knitr,
rmarkdown,
scran,
SingleCellMultiModal,
TENxPBMCData,
testthat (>= 3.0.0)
Config/testthat/edition: 3
Imports:
celda,
dbscan,
DelayedArray,
ggplot2,
Matrix (>= 1.5.3),
MCMCprecision,
methods,
patchwork,
plyr,
Rcpp (>= 0.12.0),
RcppParallel (>= 5.0.1),
reshape2,
rstan (>= 2.18.1),
rstantools (>= 2.2.0),
S4Vectors,
scater,
Seurat,
SingleCellExperiment,
SummarizedExperiment,
withr
Biarch: true
Depends:
R (>= 3.4.0)
LinkingTo:
BH (>= 1.66.0),
Rcpp (>= 0.12.0),
RcppEigen (>= 0.3.3.3.0),
RcppParallel (>= 5.0.1),
rstan (>= 2.18.1),
StanHeaders (>= 2.18.0)
SystemRequirements: GNU make
VignetteBuilder: knitr
biocViews: SingleCell, Bayesian
vjcitn
yuan-yin-truly
jianhong
lshep
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