bioc-issue-bot
commented
1 year ago Hi @SimonSchlumbohm
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: HarmonizR
Title: Handles missing values and makes more data available
Version: 0.99.0
Authors@R:
c(person(given = "Simon",
family = "Schlumbohm",
role = c("aut", "cre"),
email = "schlumbohm@hsu-hh.de"),
person(given = "Julia",
family = "Neumann",
role = "aut"),
person(given = "Philipp",
family = "Neumann",
role = "aut"))
Description: An implementation, which takes input data and makes it available
for proper batch effect removal by ComBat or Limma. The implementation appropriately
handles missing values by dissecting the input matrix into smaller matrices
with sufficient data to feed the ComBat or limma algorithm. The adjusted
data is returned to the user as a rebuild matrix. The implementation is
meant to make as much data available as possible with minimal data loss.
Depends: R (>= 4.2.0)
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
biocViews: BatchEffect
Imports:
doParallel (>= 1.0.16),
foreach (>= 1.5.1),
janitor (>= 2.1.0),
plyr (>= 1.8.6),
sva (>= 3.36.0),
seriation (>= 1.3.5),
limma (>= 3.46.0)
Suggests:
knitr,
rmarkdown,
testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
vjcitn
SimonSchlumbohm
ococrook
lshep
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