bioc-issue-bot
commented
1 year ago Hi @lhc70000
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: scMultiSim
Title: Simulation of Multi-Modality Single Cell Data Guided By Gene Regulatory Networks and Cell-Cell Interactions
Version: 0.99.0
Authors@R:
c(person(given = "Hechen",
family = "i",
role = c("aut", "cre"),
email = "hli691@gatech.edu",
comment = c(ORCID = "0000-0003-4907-429X")),
person(given = "Xiuwei",
family = "Zhang",
email = "zhangxiuwei03@gmail.com",
role = "aut"),
person(given = "Michael",
family = "Squires",
email = "squiresmf@gatech.edu",
role = "aut"))
Description:
scMultiSim simulates paired single cell RNA-seq, single cell ATAC-seq and RNA velocity data,
while incorporating mechanisms of gene regulatory networks, chromatin accessibility and
cell-cell interactions. It allows users to tune various parameters controlling the
amount of each biological factor, variation of gene-expression levels,
the influence of chromatin accessibility on RNA sequence data, and so on.
It can be used to benchmark various computational methods for single cell multi-omics data,
and to assist in experimental design of wet-lab experiments.
License: Artistic-2.0
Encoding: UTF-8
RoxygenNote: 7.2.3
Depends:
R (>= 3.5.0)
Imports:
foreach,
rlang,
dplyr,
ggplot2,
Rtsne,
ape,
MASS,
matrixStats,
phytools,
SummarizedExperiment,
KernelKnn,
gplots,
zeallot,
crayon,
assertthat,
igraph,
methods,
grDevices,
graphics,
stats,
utils
Suggests:
knitr,
rmarkdown,
roxygen2,
testthat (>= 3.0.0)
biocViews: SingleCell, Transcriptomics
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
BugReports: https://github.com/ZhangLabGT/scMultiSim/issues
Config/testthat/edition: 3
vjcitn
lhc70000
ococrook
lshep
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