bioc-issue-bot
commented
1 year ago Hi @KJeynesCupper
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: mobileRNA
Type: Package
Title: Identify mobile RNA molecules in plant graft systems
Version: 0.99.0
Authors@R: c(
person("Katie", "Jeynes-Cupper", email = "katie.jeynescupper@gmail.com",
role = c("cre","aut")),
person("Marco", "Catoni", email = "m.catoni@bham.ac.uk", role = "aut"))
Description: The mobileRNA package allows for the identifcation of mobile small
RNA molecules (20-24 nt) and messenger RNAs (mRNAs) derived from one genotype
which have travelled across a graft junction into another genotype in a
hetero-graft plant system.The package includes pre-mapping steps and analysis
steps for sRNA-seq mRNA-seq data with the end goal of identifying mobile RNAs
and their potential function or implications on phenotypic changes.
License: MIT + file LICENSE
URL: https://github.com/KJeynesCupper/mobileRNA.git,
https://kjeynescupper.github.io/mobileRNA/
Depends:
R (>= 4.0)
VignetteBuilder:
knitr
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Suggests:
knitr,
rmarkdown,
BiocStyle
Imports:
dplyr,
tidyr,
ggplot2,
BiocGenerics,
DESeq2,
edgeR,
Repitools,
ggrepel,
grDevices,
pheatmap,
stringr,
utils,
tidyselect,
RColorBrewer,
GenomicRanges,
rtracklayer,
GenomeInfoDb,
data.table,
SimDesign,
scales,
IRanges,
stats,
Biostrings,
xfun,
magrittr
biocViews:
Visualization,
RNASeq,
Sequencing,
SmallRNA
SystemRequirements: ShortStack (https://github.com/MikeAxtell/ShortStack)
BiocType: Workflow
vjcitn
KJeynesCupper
PeteHaitch
lshep
Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor
Repository: https://github.com/KJeynesCupper/mobileRNA Confirm the following by editing each check box to '[x]'
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[x ] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.
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