bioc-issue-bot
commented
1 year ago Hi @adricaba
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: roastgsa
Type: Package
Version: 0.99.2
Date: 2023-06-13
Title: Rotation based gene set analysis
Authors@R: person("Adria", "Caballe", email = "adria.caballe@irbbarcelona.org",role = c("aut", "cre"))
Description: This package implements a variety of functions useful for
gene set analysis using rotations to approximate the
null distribution. It contributes with the implementation of
seven test statistic scores that can be used with different goals
and interpretations. Several functions are available to complement the statistical results
with graphical representations.
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: Microarray, Preprocessing, Normalization, GeneExpression, Survival, Transcription, Sequencing, Transcriptomics, Bayesian, Clustering, Regression, RNASeq, MicroRNAArray, mRNAMicroarray, FunctionalGenomics, SystemsBiology, ImmunoOncology, DifferentialExpression, GeneSetEnrichment, BatchEffect, MultipleComparison, QualityControl, TimeCourse, Metabolomics, Proteomics, Epigenetics, Cheminformatics, ExonArray, OneChannel, TwoChannel, ProprietaryPlatforms, CellBiology, BiomedicalInformatics, AlternativeSplicing, DifferentialSplicing, DataImport, Pathways
Depends: R (>= 4.1.3), gplots, ggplot2, limma, RColorBrewer, Biobase
Imports: parallel, grDevices, graphics, utils, stats, methods, grid
Suggests: BiocStyle, knitr, rmarkdown, GSEABenchmarkeR, EnrichmentBrowser, preprocessCore, DESeq2
License: GPL-3
Kayla-Morrell
adricaba
lshep
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