bioc-issue-bot
commented
1 year ago Hi @cmeyring
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The DESCRIPTION file for this package is:
Package: zitools
Title: Analysis of zero-inflated count data
Version: 0.99.0
Authors@R:
person("Carlotta", "Meyring", , "carlotta.meyring@uniklinik-freiburg.de", role = c("aut", "cre"),
comment = c(ORCID = "0009-0000-6201-7615"))
Description:
zitools allows for zero inflated count data analysis by either using
down-weighting of excess zeros or by replacing an appropriate proportion of
excess zeros with NA. Through overloading frequently used statistical
functions (such as mean, median, standard deviation), plotting functions
(such as boxplots or heatmap) or differential abundance tests, it allows a
wide range of downstream analyses for zero-inflated data in a less biased
manner.
License: BSD_3_clause + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports: phyloseq,
pscl,
ggplot2,
MatrixGenerics,
SummarizedExperiment,
stats,
VGAM,
matrixStats,
tidyr,
tibble,
dplyr,
DESeq2,
reshape2,
RColorBrewer,
magrittr,
BiocGenerics,
graphics,
utils
Suggests:
knitr,
rmarkdown,
BiocStyle,
testthat (>= 3.0.0),
tidyverse
Config/testthat/edition: 3
Collate:
'data.R'
'globals.R'
'ziMain.R'
'helper.R'
'inherited_functions.R'
'plots.R'
'utils.R'
Depends: R (>= 4.3.0),
methods
VignetteBuilder: knitr
biocViews: Software, StatisticalMethod
LazyData: true
vjcitn
cmeyring
lshep
Kayla-Morrell
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Justification for one warning: set.seed is used when randomly dividing a matrix into smaller blocks to ensure a reproducible process.
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