bioc-issue-bot
commented
11 months ago Hi @jokergoo
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: simona
Type: Package
Title: Semantic Similarity in Bio-Ontologies
Version: 0.99.0
Date: 2023-08-02
Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
comment = c('ORCID'="0000-0002-7395-8709"))
Depends: R (>= 4.2.0)
Imports: methods, Rcpp, matrixStats, GetoptLong, grid, GlobalOptions,
igraph, Polychrome, S4Vectors, xml2, circlize, TSP, ComplexHeatmap,
grDevices, stats, utils
Suggests: knitr, testthat, BiocManager, GO.db, org.Hs.eg.db, proxyC, AnnotationDbi,
Matrix, DiagrammeR
LinkingTo: Rcpp
VignetteBuilder: knitr
Description: The package implements a rich set of methods for semantic similarity
analysis on bio-ontologies. They include methods for information contents, similarities between
two terms as well as similarities between two groups of terms. It also implements
visualizations on DAGs.
biocViews: Software, Annotation, GO, BiomedicalInformatics
URL: https://github.com/jokergoo/simona
SystemRequirements: Perl, Java
License: MIT + file LICENSE
RoxygenNote: 7.2.3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
vjcitn
jianhong
jokergoo
lshep
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