IMAS

[hangost]

Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor

• Repository: https://github.com/hangost/IMAS Confirm the following by editing each check box to '[x]'

• [ x ] I understand that by submitting my package to Bioconductor, the package source and all review commentary are visible to the general public.

• [ x ] I have read the Bioconductor Package Submission instructions. My package is consistent with the Bioconductor Package Guidelines.

• [ x ] I understand that a minimum requirement for package acceptance is to pass R CMD check and R CMD BiocCheck with no ERROR or WARNINGS. Passing these checks does not result in automatic acceptance. The package will then undergo a formal review and recommendations for acceptance regarding other Bioconductor standards will be addressed.

• [ x ] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.

• [ x ] I am committed to the long-term maintenance of my package. This includes monitoring the support site for issues that users may have, subscribing to the bioc-devel mailing list to stay aware of developments in the Bioconductor community, responding promptly to requests for updates from the Core team in response to changes in R or underlying software.

I am familiar with the essential aspects of Bioconductor software management, including:

• [ x ] The 'devel' branch for new packages and features.
• [ x ] The stable 'release' branch, made available every six months, for bug fixes.
• [ x ] Bioconductor version control using Subversion (optionally via GitHub).

For help with submitting your package, please subscribe and post questions to the bioc-devel mailing list.

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the following build report for more details:

http://bioconductor.org/spb_reports/IMAS_buildreport_20170405070238.html

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

6b8b4ef Add files via upload

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the following build report for more details:

http://bioconductor.org/spb_reports/IMAS_buildreport_20170405082941.html

[hangost]

Dear lshep, I very much appreciate for your helps!!

There were some variables with errors because of their environments in only Windows server. Unfortunately, since I can't see the error in my locals, which are in MAC OS, Linux, and Windows 10, (the package build were successfully finished in all of the locals), I need to modify the codes, uploading in GitHub and pushing to the bioconductor server. So, I'm sorry to push the package and bump versions too much.

The source codes are completely corrected, but there is an error to be not able to find vignette pdf file in only Windows server. I'm not sure why this is occurred. Any help you can provide would be very much appreciated.

Thanks, Seonggyun.

[lshep]

I think this ERROR is something on our build system. I will review the changes you made thus far.

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the following build report for more details:

http://bioconductor.org/spb_reports/IMAS_buildreport_20170405090731.html

[lshep]

Thank you for making the other changes. I will mark your package as accepted. Please keep the issue open and you will receive svn instructions via email soon (normally within a week).
Please note: If the windows ERROR persists on the daily build system, your attention will be needed immediately to remedy.

[hangost]

Dear, I sincerely appreciate for your helps and considering this R package. I will check them! Thanks.

Can I change codes a little before or after storing in the svn? I have a plan to change codes with BiocParallel instead of foreach. And, could this package release to the next version?

Thanks, Seonggyun.

[lshep]

Your code can always be updated and you will have access to make any changes you deem necessary. @mtmorgan any additional comments on this?

[mtmorgan]

Yes your package will be added to the nightly builds and svn repository. You'll receive an email in a couple of days with additional instructions, including on how to update the svn repository with your latest revisions. These will be included in the next Bioconductor release.