bioc-issue-bot
commented
10 months ago Hi @aditharun
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: plasmut
Type: Package
Title: Stratifying mutations observed in cell-free DNA and white blood cells as germline, hematopoietic, or somatic
Version: 0.99.0
Authors@R:
c(person(given = "Adith",
family = "Arun",
role = c("aut", "cre"),
email = "adith.3.arun@gmail.com"),
person(given = "Robert",
family = "Scharpf",
role = "aut"))
Description: A Bayesian method for quantifying the liklihood that a given plasma mutation arises from clonal hematopoesis or the underlying tumor. It requires sequencing data of the mutation in plasma and white blood cells with the number of distinct and mutant reads in both tissues. We implement a Monte Carlo importance sampling method to assess the likelihood that a mutation arises from the tumor relative to non-tumor origin.
License: Artistic-2.0
Encoding: UTF-8
biocViews: Bayesian, SomaticMutation, GermlineMutation, Sequencing
RoxygenNote: 7.2.3
Imports:
tibble,
stats,
dplyr
Depends:
R (>= 4.1.0)
Suggests:
knitr,
rmarkdown,
tidyverse,
ggrepel,
magrittr,
qpdf,
BiocStyle,
biocViews,
testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
aditharun
Kayla-Morrell
lshep
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