bioc-issue-bot
commented
10 months ago Hi @tyeulalio
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: regionalpcs
Title: Summarizing Regional Methylation with Regional Principal Components Analysis
Version: 0.99.1
Authors@R:
person("Tiffany", "Eulalio", , "tyeulalio@gmail.com",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-7084-9646"))
Description:
Functions to summarize DNA methylation data using regional principal
components. Regional principal components are computed using principal
components analysis within genomic regions to summarize the variability
in methylation levels across CpGs. The number of principal components is
chosen using either the Marcenko-Pasteur or Gavish-Donoho method to
identify relevant signal in the data.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
URL: https://github.com/tyeulalio/regionalpcs
BugReports: https://github.com/tyeulalio/regionalpcs/issues
biocViews:
DNAMethylation,
DifferentialMethylation,
StatisticalMethod,
Software,
MethylationArray
Imports:
dplyr,
magrittr,
PCAtools,
tibble
Suggests:
GenomicRanges,
IlluminaHumanMethylation450kanno.ilmn12.hg19,
knitr,
liftOver,
rmarkdown,
RMTstat,
RNOmni,
testthat (>= 3.0.0),
tidyverse,
BiocStyle
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends:
R (>= 4.3.0)
LazyData: false
LiNk-NY
tyeulalio
lshep
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