bioc-issue-bot
commented
10 months ago Hi @kevinrue
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: iSEEpathways
Title: iSEE extension for panels related to pathway analysis
Version: 0.99.0
Date: 2023-09-04
Authors@R:
c(person("Kevin", "Rue-Albrecht", email = "kevinrue67@gmail.com",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0003-3899-3872")),
person("Thomas", "Sandmann", email = "tomsing1@gmail.com",
role = c("ctb"),
comment = c(ORCID = "0000-0002-6601-8890")),
person("Denali Therapeutics", role = c("fnd")))
Description: This package contains diverse functionality to extend the usage
of the iSEE package, including additional classes for the panels or modes
facilitating the analysis of pathway analysis results.
This package does not perform pathway analysis. Instead, it provides methods
to embed precomputed pathway analysis results in a SummarizedExperiment
object, in a manner that is compatible with interactive visualisation
in iSEE applications.
License: Artistic-2.0
URL: https://github.com/iSEE/iSEEpathways
BugReports: https://support.bioconductor.org/t/iSEEpathways
biocViews: Software,
Infrastructure
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends:
iSEE
Imports:
ggplot2,
methods,
S4Vectors,
shiny,
shinyWidgets,
SummarizedExperiment
Suggests:
airway,
BiocStyle,
covr,
edgeR,
fgsea,
GO.db,
iSEEde,
knitr,
org.Hs.eg.db,
RefManageR,
rmarkdown,
scater,
scuttle,
sessioninfo,
testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Remotes:
iSEE/iSEEde
kevinrue
federicomarini
lshep
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