Bioconductor / Contributions

Contribute Packages to Bioconductor
131 stars 33 forks source link

limpca #3142

Closed ManonMartin closed 10 months ago

ManonMartin commented 10 months ago

Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor

Confirm the following by editing each check box to '[x]'

I am familiar with the essential aspects of Bioconductor software management, including:

For questions/help about the submission process, including questions about the output of the automatic reports generated by the SPB (Single Package Builder), please use the #package-submission channel of our Community Slack. Follow the link on the home page of the Bioconductor website to sign up.

bioc-issue-bot commented 10 months ago

Hi @ManonMartin

Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: limpca
Type: Package
Title: An R package for the linear modeling of high-dimensional designed data based on ASCA/APCA family of methods
Version: 0.99.0
Authors@R: c(person("Bernadette", "Govaerts", role = c("aut", "ths"),
           email = "bernadette.govaerts@uclouvain.be"),
    person("Sebastien","Franceschini", role = "ctb",
          email="sfranceschini@uliege.be"),
    person("Robin","van Oirbeek", role = "ctb",
          email="robin.vanoirbeek@gmail.com"),
    person("Michel","Thiel", role = "aut",
          email="michel.thiel@uclouvain.be"),
    person("Pascal","de Tullio", role = "dtc",
          email="pdetullio@uliege.be"),
    person("Manon","Martin", role = c("aut", "cre"),
          email="manon.martin@uclouvain.be",
          comment = c(ORCID = "0000-0003-4800-0942")),
    person("Nadia", "Benaiche", role = "ctb",
           email = "nadia.benaiche@student.uclouvain.be"))
Description: >
 This package has for objectives to provide a method to make Linear Models 
 for high-dimensional designed data. limpca applies a GLM (General Linear Model) 
 version of ASCA and APCA to analyse multivariate sample profiles generated 
 by an experimental design. ASCA/APCA provide powerful visualization 
 tools for multivariate structures in the space of each effect of 
 the statistical model linked to the experimental design and contrarily 
 to MANOVA, it can deal with mutlivariate datasets having more variables 
 than observations. This method can handle unbalanced design.
License: Artistic-2.0
Encoding: UTF-8
LazyData: FALSE
VignetteBuilder: knitr
Imports: ggplot2, stringr, plyr, ggrepel, reshape2,
    grDevices, graphics, doParallel, parallel, dplyr, tibble, tidyr, ggsci,
    tidyverse, methods, stats
Suggests: 
    BiocStyle, pander, 
    rmarkdown, car, gridExtra, knitr
biocViews: StatisticalMethod, PrincipalComponent, Regression, Visualization, ExperimentalDesign, MultipleComparison
RoxygenNote: 7.2.3
Roxygen: list(markdown=TRUE)
BugReports: https://github.com/ManonMartin/limpca/issues
URL: https://github.com/ManonMartin/limpca,
    https://manonmartin.github.io/limpca/
lshep commented 10 months ago

@ManonMartin This was submitted during a time we were running updates and it did not get properly ingested for us to run checks on our system. Would you please mind submitting again as a new issue. I'm very sorry for the inconvenience.