bioc-issue-bot
commented
1 year ago Hi @const-ae
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: lemur
Type: Package
Title: Latent Embedding Multivariate Regression
Version: 0.99.1
Authors@R: person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X"))
Description: Fit a latent embedding multivariate regression (LEMUR) model to multi-condition
single-cell data. The model provides a parametric description of single-cell data measured
with complex experimental designs. The parametric model is used to (1) align conditions, (2) predict
log fold changes between conditions for all cells, and (3) identify cell neighborhoods with
consistent log fold changes. For those neighborhoods, a pseudobulked differential expression test
is conducted to assess which genes are significantly changed.
URL: https://github.com/const-ae/lemur
BugReports: https://github.com/const-ae/lemur/issues
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Imports:
stats,
utils,
irlba,
methods,
SingleCellExperiment,
SummarizedExperiment,
rlang,
vctrs,
glmGamPoi (>= 1.12.0),
BiocGenerics,
S4Vectors,
Matrix,
DelayedMatrixStats,
HDF5Array,
MatrixGenerics,
matrixStats,
Rcpp,
harmony,
limma,
BiocNeighbors
Suggests:
testthat (>= 3.0.0),
tidyverse,
uwot,
dplyr,
edgeR,
knitr,
rmarkdown
LinkingTo:
Rcpp,
RcppArmadillo
Depends:
R (>= 4.1)
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
biocViews: Transcriptomics, DifferentialExpression, SingleCell, DimensionReduction, Regression
VignetteBuilder: knitr
const-ae
lshep
jianhong
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