bioc-issue-bot
commented
10 months ago Hi @koyelucd
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: betaHMM
Type: Package
Title: A Hidden Markov Model Approach for Identifying Differentially Methylated
Sites and Regions for Beta-Valued DNA Methylation Data
Version: 0.99.0
Authors@R: c(person("Koyel","Majumdar",email="koyel.majumdar@ucdconnect.ie",
role=c("cre","aut"),comment = c(ORCID = "0000-0001-6469-488X")),
person("Romina","Silva",
role="aut"),
person("Antoinette Sabrina","Perry",
role="aut"),
person("Ronald William","Watson",
role="aut"),
person("Isobel Claire","Gorley",email="claire.gormley@ucd.ie",
role="aut", comment=c(ORCID="0000-0001-7713-681X")),
person("Thomas Brendan","Murphy",email="brendan.murphy@ucd.ie",
role="aut",comment=c(ORCID="0000-0002-5668-7046")),
person("Florence","Jaffrezic",email="florence.jaffrezic@inrae.fr",
role="aut"),
person("Andrea","Rau",email="andrea.rau@inrae.fr",role="aut",
comment = c(ORCID = "0000-0001-6469-488X")))
Description: A novel approach utilizing a homogeneous hidden Markov model. And
effectively model untransformed beta values. To identify DMCs while
considering the spatial. Correlation of the adjacent CpG sites.
License: GPL-3
Encoding: UTF-8
Imports: stats,
ggplot2,
scales,
methods,
pROC,
foreach,
doParallel,
parallel,
cowplot,
dplyr,
tidyr,
stringr,
utils
Depends: R (>= 4.3.0), SummarizedExperiment, S4Vectors
RoxygenNote: 7.2.3
biocViews: DNAMethylation, DifferentialMethylation, ImmunoOncology,
BiomedicalInformatics, MethylationArray, Software,
MultipleComparison, Sequencing, Spatial, Coverage,
GeneTarget, HiddenMarkovModel, Microarray
Suggests:
rmarkdown,
knitr,
testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
lshep
jianhong
koyelucd
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