bioc-issue-bot
commented
9 months ago Hi @assaron
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: gatom
Title: Finding an Active Metabolic Module in Atom Transition Network
Version: 0.99.0
Authors@R:
c(
person("Anastasiia", "Gainullina", role = c("aut")),
person("Mariia", "Emelianova", role = c("aut")),
person("Alexey", "Sergushichev", email = "alsergbox@gmail.com", role = c("aut", "cre")))
Description: This package implements a metabolic network analysis pipeline to
identify an active metabolic module based on high throughput data.
The pipeline takes as input transcriptional and/or metabolic data
and finds a metabolic subnetwork (module) most regulated between the two
conditions of interest. The package further provides functions for module
post-processing, annotation and visualization.
biocViews: GeneExpression, DifferentialExpression, Pathways, Network
Depends:
R (>= 4.3.0)
Imports:
data.table,
igraph,
BioNet,
plyr,
methods,
XML,
sna,
intergraph,
network,
GGally,
grid,
ggplot2,
mwcsr,
pryr,
htmlwidgets,
htmltools,
shinyCyJS
Suggests:
testthat,
knitr,
rmarkdown,
KEGGREST,
AnnotationDbi,
org.Mm.eg.db,
reactome.db,
fgsea,
readr,
BiocStyle,
R.utils
License: MIT + file LICENCE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
VignetteBuilder: knitr
URL: https://github.com/ctlab/gatom/
BugReports: https://github.com/ctlab/gatom/issues
lshep
assaron
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