bioc-issue-bot
commented
9 months ago Hi @adeschen
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The DESCRIPTION file for this package is:
Package: enrichViewNet
Type: Package
Version: 0.99.0
Date: 2021-03-25
Title: From functional enrichment results to biological networks
Description: This package enables the visualization of functional
enrichment results as network graphs. First the package enables the
visualization of enrichment results, in a format corresponding to the one
generated by gprofiler2, as a customizable Cytoscape network. In those
networks, both gene datasets (GO terms/pathways/protein complexes) and
genes associated to the datasets are represented as nodes. While the
edges connect each gene to its dataset(s). The package also provides the
option to create enrichment maps from functional enrichment results.
Enrichment maps enable the visualization of enriched terms into a network
with edges connecting overlapping genes.
Authors@R: c(person("Astrid", "Deschênes", email = "adeschen@hotmail.com",
role=c("aut", "cre"), comment=c(ORCID = "0000-0001-7846-6749")),
person("Pascal", "Belleau", email = "pascal_belleau@hotmail.com",
role=c("aut"), comment = c(ORCID = "0000-0002-0802-1071")),
person("Robert L.", "Faure", email="robert.faure@crchudequebec.ulaval.ca",
role=c("aut"), comment=c(ORCID="0000-0003-1798-4723")),
person("Maria J.", "Fernandes",
email="maria.fernandes@crchudequebec.ulaval.ca", role = c("aut"),
comment=c(ORCID="0000-0002-3973-025X")),
person(given="Alexander", family="Krasnitz", email="krasnitz@cshl.edu",
role=c("aut")),
person(given="David A.", family="Tuveson",
email="dtuveson@cshl.edu",
role=c("aut"), comment=c(ORCID="0000-0002-8017-2712")))
Encoding: UTF-8
License: Artistic-2.0
Depends: R (>= 4.3.0)
Imports: gprofiler2,
strex,
RCy3,
jsonlite,
stringr,
enrichplot,
methods
Suggests:
BiocStyle,
knitr,
rmarkdown,
testthat
biocViews: BiologicalQuestion,
Software,
Network,
NetworkEnrichment,
GO
VignetteBuilder: knitr
URL: https://github.com/adeschen/enrichViewNet, https://adeschen.github.io/enrichViewNet/
BugReports: https://github.com/adeschen/enrichViewNet/issues
RoxygenNote: 7.2.3
jianhong
adeschen
lshep
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