bioc-issue-bot
commented
1 year ago Hi @travis-m-blimkie
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: pathlinkR
Type: Package
Title: Analyze and interpret RNA-Seq results
Version: 0.99.360
Authors@R: c(
person("Travis", "Blimkie", , "travis.m.blimkie@gmail.com", role = c("cre"), comment = c(ORCID = "0000-0001-8778-8627")),
person("Andy", "An", , "andy@hancocklab.com", role = c("aut"))
)
Description: pathlinkR is an R package designed to facilitate analysis of
RNA-Seq results. Specifically, our aim with pathlinkR was to provide a
number of tools which take a list of DE genes and perform different analyses
on them, aiding with the interpretation of results. Functions are included
to perform pathway enrichment, with muliplte databases supported, and tools
for visualizing these results. Genes can also be used to create and plot
protein-protein interaction networks, all from inside of R.
biocViews: GeneSetEnrichment, Network, Pathways, Reactome, RNASeq,
NetworkEnrichment
BiocType: Software
BugReports: https://github.com/hancockinformatics/pathlinkR
License: GPL-3 + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports:
circlize,
clusterProfiler,
ComplexHeatmap,
dplyr,
ggforce,
ggplot2,
ggpubr,
ggraph,
ggrepel,
grid,
igraph,
purrr,
sigora,
SteinerNet,
stringr,
tibble,
tidygraph,
tidyr,
vegan,
visNetwork
Depends:
R (>= 4.2.0)
LazyDataCompression: xz
LazyData: true
Suggests:
AnnotationDbi,
BiocStyle,
biomaRt,
covr,
jsonlite,
knitr,
org.Hs.eg.db,
rmarkdown,
scales,
testthat (>= 3.0.0),
vdiffr
VignetteBuilder: knitr
Config/testthat/edition: 3
travis-m-blimkie
lshep
HelenaLC
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