bioc-issue-bot
commented
1 year ago Hi @baerlachlan
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: tadar
Title: Differential Allelic Representation
Version: 0.99.0
Description: This package provides functions to standardise the analysis of
Differential Allelic Representation (DAR). DAR analysis is intended to
be performed on genotype calls from variant discovery software, resulting
in a metric that represents the allelic diversity between groups of samples
at each SNP locus. The DAR metric provides a good estimate for the
possibility of expression quantitative trait loci differences between
sample groups, which may contribute to unexpected variability gene
expression and influence to results of Differential Expression analysis.
Authors@R:
c(person("Lachlan", "Baer",
email = "baerlachlan@gmail.com",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-5213-3401")),
person("Stevie", "Pederson",
email = "stephen.pederson.au@gmail.com",
role = "aut",
comment = c(ORCID = "0000-0001-8197-3303")))
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Config/testthat/edition: 3
BugReports: https://github.com/baerlachlan/tadar/issues
URL: https://github.com/baerlachlan/tadar
BiocType: Software
biocViews: Sequencing, RNASeq, SNP, GenomicVariation, VariantAnnotation,
DifferentialExpression
VignetteBuilder: knitr
Depends:
GenomicRanges,
ggplot2,
R (>= 4.3.0)
Imports:
BiocGenerics,
GenomeInfoDb,
Gviz,
IRanges,
MatrixGenerics,
methods,
rlang,
Rsamtools,
S4Vectors,
stats,
VariantAnnotation
Suggests:
BiocStyle,
covr,
knitr,
limma,
rmarkdown,
testthat (>= 3.0.0),
tidyverse
hpages
lshep
baerlachlan
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