bioc-issue-bot
commented
1 year ago Hi @LouisLeNezet
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: Pedigree
Version: 0.99.0
Date: 2023-09-19
Title: Pedigree Functions
Authors@R: c(
person("Louis", "Le Nézet", email="louislenezet@gmail.com",
role=c("aut","cre"), comment = c(ORCID = "0009-0000-0202-2703")),
person("Jason", "Sinnwell", email="sinnwell.jason@mayo.edu", role="aut"),
person("Terry", "Therneau", role="aut"),
person("Daniel", "Schaid", role="ctb"),
person("Elizabeth", "Atkinson", role="ctb"),
person("Louis", "Le Nezet", role='ctb'))
Depends:
R (>= 4.3.0)
Imports:
graphics,
stats,
methods,
ggplot2,
utils,
grDevices,
stringr,
plyr,
dplyr,
tidyr,
quadprog,
Matrix
Description: Routines to handle family data with a pedigree object. The initial purpose
was to create correlation structures that describe family relationships such
as kinship and identity-by-descent, which can be used to model family data
in mixed effects models, such as in the coxme function. Also includes a tool
for pedigree drawing which is focused on producing compact layouts without
intervention. Recent additions include utilities to trim the pedigree object
with various criteria, and kinship for the X chromosome.
License: Artistic-2.0
URL: https://cran.r-project.org/package=kinship2
Encoding: UTF-8
RoxygenNote: 7.2.3
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
Suggests:
testthat (>= 3.0.0),
diffviewer,
vdiffr,
rmarkdown,
BiocStyle,
knitr,
withr
Config/testthat/edition: 3
biocViews: Software, DataRepresentation, Genetics, Alignment
BugReports: https://github.com/LouisLeLezet/Pedigree/issues
url: https://github.com/LouisLeNezet/Pedigree
BiocType: Software
Collate:
'Pedigree-package.R'
'alignped4.R'
'alignped3.R'
'alignped2.R'
'alignped1.R'
'pedigree.R'
'validity.R'
'pedigreeClass.R'
'check_hints.R'
'kindepth.R'
'auto_hint.R'
'align.R'
'best_hint.R'
'bit_size.R'
'data.R'
'descendants.R'
'make_famid.R'
'family_check.R'
'kinship.R'
'utils.R'
'find_unavailable.R'
'find_avail_affected.R'
'find_avail_noninform.R'
'fix_parents.R'
'generate_aff_inds.R'
'generate_colors.R'
'ibd_matrix.R'
'is_informative.R'
'min_dist_inf.R'
'norm_data.R'
'num_child.R'
'ped_to_legdf.R'
'ped_to_plotdf.R'
'plot_fct.R'
'plot_fromdf.R'
'plot.R'
'shrink.R'
'trim.R'
'unrelated.R'
'useful_inds.R'
LouisLeNezet
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