bioc-issue-bot
commented
1 year ago Hi @atuldeshpande
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Type: Package
Package: SpaceMarkers
Title: Spatial Interaction Markers
Version: 0.99.0
Authors@R:c(
person(given = "Atul", family = "Deshpande", email = "adeshpande@jhu.edu", role = c("aut", "cre"), comment = c(ORCID="0000-0001-5144-6924")),
person(given = "Ludmila", family = "Danilova", email = "ldanilo1@jhmi.ed", role = "ctb")
)
Description:Spatial transcriptomic technologies have helped to resolve the connection
between gene expression and the 2D orientation of tissues relative to each other.
However, the limited single-cell resolution makes it difficult to highlight the most
important molecular interactions in these tissues. SpaceMarkers, R/Bioconductor software,
can help to find molecular interactions, by identifying genes associated with latent space
interactions in spatial transcriptomics.
License: MIT + file LICENSE
Depends:
matrixStats,
matrixTests,
pracma,
R (>= 4.3.0),
rstatix,
spatstat
biocViews: SingleCell, GeneExpression, Software, Spatial, Transcriptomics
Imports:
ape,
hdf5r,
jsonlite,
Matrix,
qvalue,
spatstat.explore,
spatstat.geom,
stats,
utils
Suggests:
data.table,
devtools,
dplyr,
ggplot2,
hrbrthemes,
knitr,
RColorBrewer,
cowplot,
readbitmap,
rjson,
rmarkdown,
testthat (>= 3.0.0),
viridis,
AnnotationDbi,
clusterProfiler,
enrichplot,
org.Hs.eg.db
VignetteBuilder:
knitr
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
lshep
atuldeshpande
Kayla-Morrell
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