bioc-issue-bot
commented
9 months ago Hi @golddc
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: knowYourCG
Type: Package
Title: Functional analysis of DNA methylome datasets
Version: 0.99.0
Authors: Wanding Zhou, David Goldberg, Ethan Jacob Moyer
Authors@R: c(person("Zhou", "Wanding", role=c("aut"),
email="ZHOUW3@chop.edu"),
person("Goldberg", "David", role=c("aut","cre"),
email="golddc72@pennmedicine.upenn.edu",
comment=c(ORCID="0000-0002-9622-4708")),
person("Moyer","Ethan",role=c("ctb"),
email="ejm374@drexel.edu")
)
Description: knowYourCG automates the functional analysis of DNA
methylation data. The package tests the enrichment of discrete CpG probes
across thousands of curated biological and technical features. GSEA-like
analysis can be performed on continuous methylation data query sets.
knowYourCG can also take beta matrices as input to perform feature
aggregation and unsupervised methylation module detection.
Depends: R (>= 4.3.0),
sesameData
License: MIT + file LICENSE
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.2.3
Imports:
dplyr,
methods,
rlang,
GenomicRanges,
gprofiler2,
IRanges,
ggplot2,
reshape2,
S4Vectors,
stats,
stringr,
tibble,
igraph,
utils,
wheatmap,
GenomeInfoDb
biocViews:
Epigenetics,
DNAMethylation,
MethylationArray
Suggests:
testthat (>= 3.0.0),
ggrepel,
SummarizedExperiment,
rmarkdown,
knitr,
sesame,
rnndescent
Config/testthat/edition: 3
lshep
golddc
LiNk-NY
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