bioc-issue-bot
commented
9 months ago Hi @niccolodpdu
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: CAM3
Type: Package
Title: Convex Analysis of Mixtures Version 3
Version: 0.99.0
Authors@R: person("Chiung-Ting", "Wu", email = "ctwu@vt.edu",role = c("aut", "cre"))
biocViews: Software, CellBiology, GeneExpression
Description: An R package for fully unsupervised deconvolution of complex
tissues. It provides basic functions to perform
unsupervised deconvolution on mixture expression profiles by
Convex Analysis of Mixtures (CAM) and some
auxiliary functions to help understand the subpopulation-specific results.
It also implements functions to perform supervised deconvolution based on
prior knowledge of molecular markers, S matrix or A matrix. Combining
molecular markers from CAM and from prior knowledge can achieve
semi-supervised deconvolution of mixtures.
License: GPL-2
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Depends: R (>= 3.6)
Suggests:
knitr,
rmarkdown,
BiocStyle,
testthat,
GEOquery,
rgl
VignetteBuilder: knitr
Imports:
methods,
debCAM,
stats,
Biobase,
SummarizedExperiment,
corpcor,
geometry,
NMF,
nnls,
graphics,
geometry
lshep
niccolodpdu
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