bioc-issue-bot
commented
8 months ago Hi @huerqiang
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: mhAnalysis
Type: Package
Title: microhomology analysis of SurVirus result
Version: 0.99.0
Authors@R: c(
person(given = "Erqiang", family = "Hu", email = "13766876214@163.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-1798-7513")),
person("Shanye", "Yin", email = "shanye.yin@einsteinmed.edu ", role = c("aut", "ctb"))
)
Description: A series of analyses of the results of the survey software, including micro homology analysis, etc.
A significant proportion of human cancers result from the integration of viruses
into the human genome. Therefore, investigating the mechanisms of viral
integration is crucial for understanding the underlying mechanisms of many
devastating diseases. Microhomology (MH) analysis at viral integration sites
plays a critical role in the study of viral integration mechanisms.
Previous research has shown a significant enrichment of microhomology (MH)
between the human genome and the human papillomavirus (HPV) genome at
integration breakpoints or nearby regions. To facilitate MH analysis, we have
developed the mhAnalysis software package.
License: Artistic-2.0
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.2.3
Imports:
BSgenome,
magrittr,
Rsamtools,
stringr,
GenomicAlignments,
stats
Suggests:
BSgenome.Hsapiens.UCSC.hg38,
knitr,
rmarkdown,
testthat (>= 3.0.0)
VignetteBuilder: knitr
Depends:
R (>= 4.3.0)
biocViews: Metagenomics, Software, Sequencing
Config/testthat/edition: 3
lshep
huerqiang
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