bioc-issue-bot
commented
8 months ago Hi @hpages
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: txdbmaker
Title: Tools for making TxDb objects from genomic annotations
Description: A set of tools for making TxDb objects from genomic annotations
from various sources (e.g. UCSC, Ensembl, and GFF files). These tools
allow the user to download the genomic locations of transcripts,
exons, and CDS, for a given assembly, and to import them in a TxDb
object. TxDb objects are implemented in the GenomicFeatures package,
together with flexible methods for extracting the desired features in
convenient formats.
biocViews: Infrastructure, DataImport, Annotation, GenomeAnnotation,
GenomeAssembly, Genetics, Sequencing
URL: https://bioconductor.org/packages/txdbmaker
BugReports: https://github.com/Bioconductor/txdbmaker/issues
Version: 0.99.0
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
person("H.", "Pagès", role=c("aut", "cre"),
email="hpages.on.github@gmail.com"),
person("M.", "Carlson", role="aut"),
person("P.", "Aboyoun", role="aut"),
person("S.", "Falcon", role="aut"),
person("M.", "Morgan", role="aut"),
person("M.", "Lawrence", role="aut"),
person("J.", "MacDonald", role="ctb"),
person("M.", "Ramos", role="ctb"),
person("S.", "Saini", role="ctb"),
person("L.", "Shepherd", role="ctb"))
Depends: R (>= 4.4.0), BiocGenerics, S4Vectors, IRanges, GenomeInfoDb,
AnnotationDbi, GenomicRanges, GenomicFeatures
Imports: methods, utils, stats, tools, DBI, RSQLite (>= 2.0),
Biobase, BiocIO, rtracklayer, biomaRt
Suggests: RMariaDB, mirbase.db, ensembldb, RUnit, BiocStyle, knitr, markdown
VignetteBuilder: knitr
Collate: utils.R
UCSC-utils.R
Ensembl-utils.R
findCompatibleMarts.R
TxDb-schema.R
TxDb-CREATE-TABLE-helpers.R
makeTxDb.R
makeTxDbFromUCSC.R
makeTxDbFromBiomart.R
makeTxDbFromEnsembl.R
makeTxDbFromGRanges.R
makeTxDbFromGFF.R
makeFeatureDbFromUCSC.R
makeTxDbPackage.R
zzz.R
hpages
lshep
Kayla-Morrell
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