bioc-issue-bot
commented
1 year ago Hi @js2264
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: OHCA
Title: Orchestrating Hi-C analysis with Bioconductor
Version: 0.99.0
Date: 2023-04-14
Authors@R:
c(person(given = "Jacques",
family = "Serizay",
role = c("aut", "cre"),
email = "jacquesserizay@gmail.com",
comment = c(ORCID = "0000-0002-4295-0624")))
Description: The primary aim of this book is to introduce the R user to Hi-C
analysis. This book starts with key concepts important for the analysis
of chromatin conformation capture and then presents Bioconductor tools that
can be leveraged to process, analyze, explore and visualize Hi-C data.
License: MIT + file LICENSE
URL: https://github.com/js2264/OHCA
BugReports: https://github.com/js2264/OHCA/issues
Depends:
R (>= 4.3),
HiCExperiment,
HiCool,
HiContacts,
HiContactsData,
DNAZooData,
fourDNData
Imports:
plyinteractions,
terra,
Rfast,
WGCNA,
diffHic,
strawr,
multiHiCcompare,
TopDom,
GOTHiC,
BSgenome.Hsapiens.UCSC.hg38,
ggbio,
cowplot,
patchwork,
fs,
knitr,
rebook,
quarto,
sessioninfo
biocViews:
HiC,
DNA3DStructure,
FunctionalGenomics
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
BiocType: Book
VignetteBuilder: knitr
SystemRequirements: quarto
LazyData: false
js2264
lshep
PeteHaitch
hpages
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