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I previously ran sesame no problem with version 3.17. However, since updating to version 3.18, I am having issues with the sesameDataCache() function.
This is the code I ran: `if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install(version="3.18") BiocManager::install("sesame", force=TRUE) BiocManager::install("sesameData", force=TRUE)
BiocManager::install("ExperimentHub", force=TRUE) BiocManager::install("BiocFileCache", force=TRUE) getwd() sessionInfo() library(sesame) sesame_checkVersion() library(sesameData) sesameDataCache() packageVersion("sesameData")`
This is the error message: sesame_checkVersion() SeSAMe requires matched versions of R, sesame, sesameData and ExperimentHub. Here is the current versions installed: R: 4.3.1 Bioconductor: 3.18 sesame: 1.20.0 sesameData: 1.20.0 ExperimentHub: 2.10.0
ExperimentHub Caching fails: error in evaluating the argument 'x' in selecting a method for function 'query': Failed to collect lazy table. Caused by error in
db_collect(): ! Arguments in...must be used. ✖ Problematic argument: • ..1 = Inf ℹ Did you misspell an argument name?I have no idea how to fix this... as I am extremely new to R. Any help would be appreciated.