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(inactive) GAClustR: Genetic Algorithms to Enhance Clustering of Differential Gene Expression Data #3244

Closed frankcsquared closed 8 months ago

frankcsquared commented 10 months ago

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bioc-issue-bot commented 10 months ago

Hi @frankcsquared

Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: GAClustR
Type: Package
Title: Genetic Algorithms for Enhancing Clustering of Gene Expression
        Data
Version: 0.99.1
Authors@R: 
    person(given = "Zejia", family = "Chen", email = "zchen@qmed.ca", role = c("aut", "cre"),
 comment = c(ORCID = "0000-0002-4286-7871"))
Description: Utilize the power of genetic algorithms to enhance clustering performance in scenarios where clusters play a pivotal role in correlation calculations. Employ a genetic algorithm with a fitness function centered around correlation to optimize clustering outcomes, ultimately maximizing correlation values. This package finds frequent application in the realm of gene expression data analysis.
License: MIT + file LICENSE
biocViews: DifferentialExpression, Clustering, RNASeq, Transcription
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Imports: GA, methods, Rfast, stats, utils
RoxygenNote: 7.2.3
Suggests: testthat (>= 3.0.0), DESeq2, SummarizedExperiment
LazyData: true
Depends: R (>= 3.5.0)
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2023-10-26 16:51:33 UTC; edi
Author: Zejia Chen [aut, cre] (<https://orcid.org/0000-0002-4286-7871>)
Maintainer: Zejia Chen <zchen@qmed.ca>
bioc-issue-bot commented 9 months ago

Your package has been added to git.bioconductor.org to continue the pre-review process. A build report will be posted shortly. Please fix any ERROR and WARNING in the build report before a reviewer is assigned or provide a justification on why you feel the ERROR or WARNING should be granted an exception.

IMPORTANT: Please read this documentation for setting up remotes to push to git.bioconductor.org. All changes should be pushed to git.bioconductor.org moving forward. It is required to push a version bump to git.bioconductor.org to trigger a new build report.

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bioc-issue-bot commented 9 months ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Single Package Builder.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Single Package Builder: Linux (Ubuntu 22.04.2 LTS): GAClustR_0.99.1.tar.gz macOS 12.7.1 Monterey: GAClustR_0.99.1.tar.gz

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/GAClustR to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.

lshep commented 9 months ago

Please fix all ERROR, Warning or Notes from the above build report before a reviewer is assigned for an indepth review. thank you

lshep commented 8 months ago

Do you plan on following up with this submission. Please have a clean build before a reviewer is assigned. Here is a link to the last build report.

bioc-issue-bot commented 8 months ago

This issue is being closed because there has been no progress for an extended period of time. You may reopen the issue when you have the time to actively participate in the review / submission process. Please also keep in mind that a package accepted to Bioconductor requires a commitment on your part to ongoing maintenance.

Thank you for your interest in Bioconductor.