bioc-issue-bot
commented
7 months ago Hi @js2264
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: tidyCoverage
Title: Extract and aggregate genomic coverage over features of interest
Version: 0.99.0
Date: 2023-11-09
Authors@R:
person("Jacques", "Serizay", , "jacquesserizay@gmail.com",
role = c("aut", "cre"))
Description: `tidyCoverage` framework enables tidy manipulation
of collections of genomic tracks and features using
`tidySummarizedExperiment` methods. It facilitates the
extraction, aggregation and visualization of genomic coverage over
individual of thousands of genomic loci, relying on `CoverageExperiment`
and `AggregatedCoverage` classes. This accelerates the integration
of genomic track data in genomic analysis workflows.
License: MIT + file LICENSE
URL: https://github.com/js2264/tidyCoverage
BugReports: https://github.com/js2264/tidyCoverage/issues
biocViews:
Software,
Coverage
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends:
R (>= 4.3.0),
SummarizedExperiment
Imports:
S4Vectors,
IRanges,
GenomicRanges,
GenomeInfoDb,
BiocParallel,
rtracklayer,
methods,
tidyr,
dplyr,
fansi,
pillar,
rlang,
cli,
purrr,
vctrs,
stats
Suggests:
tidySummarizedExperiment,
plyranges,
ggplot2,
TxDb.Hsapiens.UCSC.hg19.knownGene,
AnnotationHub,
GenomicFeatures,
BiocStyle,
hues,
knitr,
rmarkdown,
sessioninfo,
testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
LazyData: false
DarioS
js2264
lshep
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