bioc-issue-bot
commented
6 months ago Hi @mtekman
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: RNASeqHelper
Type: Package
Title: Generate Heatmaps and Volcano Plots for your DESeq2 Genes of Interest
Version: 0.99.0
Authors@R:
c(person(given="Mehmet", family="Tekman",
email = "mtekman89@gmail.com",
role = c("aut", "cre"), comment = c(ORCID = "0000-0002-4181-2676")),
person(given="Sebastian", family="Arnold",
email = "sebastian.arnold@pharmakol.uni-freiburg.de",
role = c("fnd"), comment = c(ORCID = "0000-0002-2688-9210")))
Description:
Perform a full DESeq2 analysis for your RNA-seq data, generating
colourful Volcano and Kmeans-clustered Heatmaps, along with
time-series gene plots for genes of interest. QC-metrics that such
as PCA validation are built in, and the heatmaps generated show
z-score scaled expression between contrasts for contrasted samples
and all. Time series plots show gene trends on normalised,
corrected, and scaled data, for varying cluster correlation
thresholds.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
VignetteBuilder: knitr
biocViews: RNASeq, QualityControl, GeneExpression
Imports:
pheatmap (>= 1.0.12), patchwork (>= 1.1.3), DESeq2 (>= 1.40.2),
dplyr (>= 1.1.3), readr (>= 2.1.4), tibble (>= 3.2.1),
ggplot2 (>= 3.4.4), ComplexHeatmap (>= 2.16.0), ggrepel (>= 0.9.4),
purrr (>= 1.0.2), tidyr (>= 1.3.0), grDevices, graphics,
grid, stats, utils
Suggests:
BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), svglite (>= 2.1.3)
Depends:
SummarizedExperiment (>= 1.30.2)
URL: https://gitlab.com/mtekman/rnaseqhelper
BugReports: https://gitlab.com/mtekman/rnaseqhelper/issues
Config/testthat/edition: 3
lshep
mtekman
jwokaty
DarioS
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