bioc-issue-bot
commented
6 months ago Hi @boyiguo1
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: tpSVG
Title: Thin plate models to detect spatially variable genes
Version: 0.99.1
Authors@R: c(
person("Boyi", "Guo",
email = "boyi.guo.work@gmail.com",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0003-2950-2349")),
person("Lukas M.", "Weber",
email = "lukas.weber.edu@gmail.com",
role = c("ctb"),
comment = c(ORCID = "0000-0002-3282-1730")),
person("Stephanie C.", "Hicks",
email = "shicks19@jhu.edu",
role = c("aut"),
comment = c(ORCID = "0000-0002-7858-0231")))
Description: The goal of `tpSVG` is to detect and visualize spatial variation in
the gene expression for spatially resolved transcriptomics data analysis.
Specifically, `tpSVG` introduces a family of count-based models, with
generalizable parametric assumptions such as Poisson distribution or
negative binomial distribution. In addition, comparing to currently
available count-based model for spatially resolved data analysis, the
`tpSVG` models improves computational time, and hence greatly improves
the applicability of count-based models in SRT data analysis.
License: MIT + file LICENSE
URL: https://github.com/boyiguo1/tpSVG
BugReports: https://github.com/boyiguo1/tpSVG/issues
biocViews:
Spatial,
Transcriptomics,
GeneExpression,
Software
Encoding: UTF-8
Depends:
mgcv,
R (>= 4.3)
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports:
BiocParallel,
MatrixGenerics,
methods,
SingleCellExperiment,
SpatialExperiment,
stats,
SummarizedExperiment
Suggests:
BiocStyle,
knitr,
nnSVG,
rmarkdown,
scran,
scuttle,
STexampleData,
escheR,
ggpubr,
colorspace,
BumpyMatrix
VignetteBuilder: knitr
boyiguo1
lshep
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