bioc-issue-bot
commented
5 months ago Hi @kinnaryshah
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: spoon
Title: Address the Mean-variance Relationship in Spatial Transcriptomics Data
Version: 0.99.0
Authors@R: c(
person(given = "Kinnary",
family = "Shah",
role = c("aut", "cre"),
email = "kinnaryshahh@gmail.com",
comment = c(ORCID = "0000-0001-7098-2116")),
person("Boyi", "Guo",
email = "boyi.guo.work@gmail.com",
role = c("aut"),
comment = c(ORCID = "0000-0003-2950-2349")),
person("Stephanie C.", "Hicks",
email = "shicks19@jhu.edu",
role = c("aut"),
comment = c(ORCID = "0000-0002-7858-0231")))
Description: This package addresses the mean-variance relationship in spatially
resolved transcriptomics data. Precision weights are generated for individual
observations using Empirical Bayes techniques. These weights are used to
rescale the data and covariates, which are then used as input in spatially
variable gene detection tools.
URL: https://github.com/kinnaryshah/spoon
BugReports: https://github.com/kinnaryshah/spoon/issues
Imports: SpatialExperiment, BRISC, nnSVG, scuttle, BiocParallel, Matrix, purrr,
methods, SummarizedExperiment, stats, utils
License: MIT + file LICENSE
Encoding: UTF-8
biocViews:
Spatial, SingleCell, Transcriptomics, GeneExpression, Preprocessing
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.0
Suggests:
testthat, STexampleData, knitr
Config/testthat/edition: 3
VignetteBuilder: knitr
kinnaryshah
lshep
jianhong
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