bioc-issue-bot
commented
4 months ago Hi @almeidasilvaf
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: HybridExpress
Title: Comparative analysis of RNA-seq data for hybrids and their progenitors
Version: 0.99.0
Date: 2023-10-17
Authors@R:
c(
person(
given = "Fabricio",
family = "Almeida-Silva",
role = c("aut", "cre"),
email = "fabricio_almeidasilva@hotmail.com",
comment = c(ORCID = "0000-0002-5314-2964")
),
person(
given = "Lucas",
family = "Prost-Boxoen",
role = "aut",
comment = c(ORCID = "0000-0003-2779-9097")
),
person(
given = "Yves",
family = "Van de Peer",
role = "aut",
email = "yves.vandepeer@psb.vib-ugent.be",
comment = c(ORCID = "0000-0003-4327-3730")
)
)
Description: HybridExpress can be used to perform comparative transcriptomics
analysis of hybrids (or allopolyploids) relative to their
progenitor species. The package features functions to perform exploratory
analyses of sample grouping, identify differentially expressed genes
in hybrids relative to their progenitors, classify genes in expression
categories (N = 12) and classes (N = 5),
and perform functional analyses. We also provide users with graphical
functions for the seamless creation of publication-ready figures that are
commonly used in the literature.
License: GPL-3
URL: https://github.com/almeidasilvaf/HybridExpress
BugReports: https://support.bioconductor.org/tag/HybridExpress
biocViews:
Software,
FunctionalGenomics,
GeneExpression,
Transcriptomics,
RNASeq,
Classification,
DifferentialExpression
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Imports:
ggplot2,
patchwork,
rlang,
DESeq2,
SummarizedExperiment,
stats,
methods,
RColorBrewer,
ComplexHeatmap,
grDevices,
BiocParallel
Suggests:
BiocStyle,
knitr,
sessioninfo,
testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends:
R (>= 4.3.0)
LazyData: true
PeteHaitch
almeidasilvaf
lshep
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