Closed danymukesha closed 2 weeks ago
Hi @danymukesha
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Type: Package
Package: BioGA
Title: Bioinformatics Genetic Algorithm (BioGA)
Version: 0.99.0
Authors@R:
person("Dany", "Mukesha", , "danymukesha@gmail.com",
role = c("aut", "cre"),
comment = c(ORCID = "0009-0001-9514-751X"))
Description: Genetic algorithm are a class of optimization algorithms
inspired by the process of natural selection and genetics. This
package allows users to analyze and optimize high throughput genomic
data using genetic algorithms. The functions provided are implemented
in C++ for improved speed and efficiency, with an easy-to-use
interface for use within R.
License: MIT + file LICENSE
URL: https://danymukesha.github.io/BioGA/
BugReports: https://github.com/danymukesha/BioGA/issues
Imports:
ggplot2,
graphics,
Rcpp,
sessioninfo
Suggests:
knitr,
rmarkdown
LinkingTo:
Rcpp
VignetteBuilder:
knitr
biocViews: ExperimentalDesign, Technology
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Could you please provide an abstract/intro section in your vignette that provides motivation for inclusion in Bioconductor and show interoperability with a common Bioconductor class
I made the changes asked above. Could you review the updates please?
Your package has been added to git.bioconductor.org to continue the pre-review process. A build report will be posted shortly. Please fix any ERROR and WARNING in the build report before a reviewer is assigned or provide a justification on why you feel the ERROR or WARNING should be granted an exception.
IMPORTANT: Please read this documentation for setting up remotes to push to git.bioconductor.org. All changes should be pushed to git.bioconductor.org moving forward. It is required to push a version bump to git.bioconductor.org to trigger a new build report.
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Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: Linux (Ubuntu 22.04.3 LTS): BioGA_0.99.0.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/BioGA
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
Please add any needed dependency to the DESCRIPTION of your package in Suggest field.
I pushed the modifications. Could you please check if everything is alright?
Please see previous post https://github.com/Bioconductor/Contributions/issues/3315#issuecomment-2012229816 You will need to push your changes to git.bioconductor.org to trigger a new build
I already committed the modification to bioconductor
You need to do a version bump so that a new build is triggered.
Received a valid push on git.bioconductor.org; starting a build for commit id: dc08dd462e584d960a3b39acaf4e59d656dbb093
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: Linux (Ubuntu 22.04.3 LTS): BioGA_0.99.1.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/BioGA
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
Received a valid push on git.bioconductor.org; starting a build for commit id: 322682aa3945187b4a628d027da2f4fe2c4c7726
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: Linux (Ubuntu 22.04.3 LTS): BioGA_0.99.2.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/BioGA
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
A reviewer has been assigned to your package for an indepth review. Please respond accordingly to any further comments from the reviewer.
Could you please fix the error first? Thank you.
Received a valid push on git.bioconductor.org; starting a build for commit id: 711726625985f724c5358e761838521cff6c5226
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
Congratulations! The package built without errors or warnings on all platforms.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: Linux (Ubuntu 22.04.3 LTS): BioGA_0.99.3.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/BioGA
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
Could you please fix the error first? Thank you.
@jianhong , I fixed the error
Thank you for submitting your package to Bioconductor. The package passed check and build. However there are several things need to be fixed. Please try to answer the comments line by line when you are ready for a second review. Code: Note: please consider; Important: must be addressed.
Depends
field is not found in DESCRIPTION.biocViews
and sessioninfo
into Suggests
importFrom
instead of import all with import
.
BiocStyle
package for formatting.
Makevars
and Makefile
not within a package when CPP version is lower than 0.11.0 or not restricted.Just wanted to check in to see if we may expect any updates soon? Otherwise, I will close this issue.
I will be workin the issue this week. Thank you for reminding!
Received a valid push on git.bioconductor.org; starting a build for commit id: 864ba147b7766f319263d9ddcf189f7258a70f04
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
Congratulations! The package built without errors or warnings on all platforms.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: Linux (Ubuntu 22.04.3 LTS): BioGA_0.99.4.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/BioGA
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
@jianhong I pushed the updates to fix the issues you mentioned.
Could you please check if everything is alright?
Sure I will do that soon.Best!Your sincerely,Jianhong OuOn May 28, 2024, at 12:40 PM, Dany Mukesha @.***> wrote: @jianhong I pushed the updates to fix the issues you mentioned. Could you please check if everything is alright?
—Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you were mentioned.Message ID: @.***>
Almost there.
Received a valid push on git.bioconductor.org; starting a build for commit id: 037f6cb3b14c64d6ae92c1d0feee0ce8cb04bf34
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
Congratulations! The package built without errors or warnings on all platforms.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: Linux (Ubuntu 22.04.3 LTS): BioGA_0.99.6.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/BioGA
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
Almost there.
The DESCRIPTION file
- [ ] Important: R version should be no less than 4.4
Documentation
- [ ] Note: Will it be better to add the authors and date in the vignettes?
@jianhong thank you for the review.
I just did the modifications you asked. Could you please check if everything is alright?
Your package has been accepted. It will be added to the Bioconductor nightly builds.
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