(inactive) mulea

[stitam]

Dear Bioconductor Team,

With this issue we would like to submit the mulea package. mulea is a comprehensive overrepresentation and functional enrichment analyser R package which reads ontologies (gene and protein sets) in a standardised GMT (Gene Matrix Transposed) format.

Kind regards, Tamás

Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor

• Repository: https://github.com/ELTEbioinformatics/mulea

Please note, this repository has an upstream which is archived and will not be updated in the future.

Confirm the following by editing each check box to '[x]'

• [x] I understand that by submitting my package to Bioconductor, the package source and all review commentary are visible to the general public.

• [x] I have read the Bioconductor Package Submission instructions. My package is consistent with the Bioconductor Package Guidelines.

• [x] I understand Bioconductor Package Naming Policy and acknowledge Bioconductor may retain use of package name.

• [x] I understand that a minimum requirement for package acceptance is to pass R CMD check and R CMD BiocCheck with no ERROR or WARNINGS. Passing these checks does not result in automatic acceptance. The package will then undergo a formal review and recommendations for acceptance regarding other Bioconductor standards will be addressed.

• [x] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.

• [x] I am committed to the long-term maintenance of my package. This includes monitoring the support site for issues that users may have, subscribing to the bioc-devel mailing list to stay aware of developments in the Bioconductor community, responding promptly to requests for updates from the Core team in response to changes in R or underlying software.

• [x] I am familiar with the Bioconductor code of conduct and agree to abide by it.

I am familiar with the essential aspects of Bioconductor software management, including:

• [x] The 'devel' branch for new packages and features.
• [x] The stable 'release' branch, made available every six months, for bug fixes.
• [x] Bioconductor version control using Git (optionally via GitHub).

For questions/help about the submission process, including questions about the output of the automatic reports generated by the SPB (Single Package Builder), please use the #package-submission channel of our Community Slack. Follow the link on the home page of the Bioconductor website to sign up.

[bioc-issue-bot]

Dear @stitam ,

I found more than one GitHub URL in your issue. Please make sure there is only one, it should look like:

https://github.com/username/reponame

I am closing this issue. Please try again with a new issue.

[stitam]

I'll open a separate issue with a single GitHub URL and then add my comments separately.

[stitam]

The new issue was also closed automatically: https://github.com/Bioconductor/Contributions/issues/3327

@lshep can you please recommend next steps? Is it possible to reopen this issue manually?

[lshep]

yep commenting on the other submission

[lshep]

we cannot open manually as a system of checks need to pass in order to be in/recognized on our system.

[stitam]

Resubmitted the package in issue #3328.