bioc-issue-bot
commented
3 months ago Hi @whtns
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Type: Package
Package: chevreul
Title: Tools for managing SingleCellExperiment objects as projects
Version: 0.99.0
Authors@R: c(
person("Kevin", "Stachelek", , "kevin.stachelek@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2085-695X")),
person("Bhavana", "Bhat", , "bhavanabhat29@gmail.com", role = "aut")
)
Description: Tools for managing SingleCellExperiment objects as projects.
Includes functions for analysis and visualization of single-cell data.
Also included is a shiny app for visualization of pre-processed scRNA data.
License: MIT + file LICENSE
URL: https://github.com/whtns/chevreul,
https://whtns.github.io/chevreul/
Date: 2024-03-05
BugReports: https://github.com/cobriniklab/chevreul/issues
Depends:
R (>= 4.4.0),
SingleCellExperiment,
scater,
shiny (>= 1.6.0),
shinydashboard
Imports:
SummarizedExperiment,
annotables (>= 0.1.91),
clustree,
ComplexHeatmap (>= 2.5.4),
DataEditR (>= 0.0.9),
DBI,
dplyr,
DT,
ensembldb,
fs,
future,
glue,
ggplotify,
ggpubr,
httr,
janitor,
magrittr,
megadepth,
methods,
patchwork,
plotly,
rlang,
RSQLite,
shinyFiles,
shinyhelper,
shinyjs,
shinyWidgets,
tidyr,
unglue,
waiter,
wiggleplotr (>= 1.13.1),
purrr,
batchelor,
stringr,
tibble,
ggplot2,
scran,
AnnotationDbi,
EnhancedVolcano,
EnrichmentBrowser,
harmony,
scuttle,
grDevices,
graphics,
stats,
utils,
pillar,
cluster,
circlize,
bluster,
EnsDb.Hsapiens.v86,
EnsDb.Mmusculus.v79,
scales,
readr,
velociraptor,
LoomExperiment,
chevreuldata,
S4Vectors,
base,
grid,
forcats
Suggests:
BiocStyle,
knitr,
monocle3 (>= 0.2.1),
RefManageR,
rmarkdown,
testthat (>= 3.0.0)
VignetteBuilder:
knitr
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
biocViews: Coverage, RNASeq, Sequencing, Visualization, GeneExpression, Transcription, SingleCell
Config/testthat/edition: 3
lshep
whtns
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