bioc-issue-bot
commented
3 months ago Hi @smped
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: motifTestR
Title: Perform key tests for binding motifs in sequence data
Version: 0.99.0
Authors@R: person("Stevie", "Pederson",
email = "stephen.pederson.au@gmail.com",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-8197-3303")
)
Description: Taking a set of sequence motifs as PWMs, test a set of sequences
for over-representation of these motifs, as well as any positional features
within the set of motifs. Enrichment analysis can be undertaken using multiple
statistical approaches. The package also contains core functions to prepare
data for analysis, and to visualise results.
License: GPL-3
Encoding: UTF-8
URL: https://github.com/smped/motifTestR
BugReports: https://github.com/smped/motifTestR/issues
Depends:
Biostrings,
GenomicRanges,
ggplot2 (>= 3.5.0),
R (>= 4.3.0),
Imports:
GenomeInfoDb,
harmonicmeanp,
IRanges,
matrixStats,
methods,
parallel,
patchwork,
rlang,
S4Vectors,
stats,
universalmotif
Suggests:
AnnotationHub,
BiocStyle,
BSgenome.Hsapiens.UCSC.hg19,
extraChIPs,
ggdendro,
knitr,
MotifDb,
rmarkdown,
rtracklayer,
testthat (>= 3.0.0)
biocViews: MotifAnnotation, ChIPSeq, ChipOnChip, SequenceMatching, Software
LazyData: false
RoxygenNote: 7.3.1
Config/testthat/edition: 3
VignetteBuilder: knitr
smped
lshep
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