bioc-issue-bot
commented
3 months ago Hi @martasevilla
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: UPDhmm
Title: Detecting Uniparental Disomy through NGS trio data
Version: 0.99-1
BugReports: https://github.com/martasevilla/UPDhmm/issues
Authors@R:
c(person(given = "Marta",
family = "Sevilla",
role= c("aut", "cre"),
email = "marta.sevilla@upf.edu",
comment = c(ORCID = "0009-0005-0179-920X")),
person(given = "Carlos",
family = "Ruiz-Arenas",
role= c("aut"),
email = "cruizarenas@unav.es",
comment = c(ORCID = "0000-0002-6014-3498")))
Description:
Uniparental disomy (UPD) is a genetic condition
where an individual inherits both copies
of a chromosome or part of it from one parent,
rather than one copy from each parent. This package
contains a HMM for detecting UPDs throguh HTS
(High Throughput Sequencing) data from trio assays.
By analizing the genotypes in the trio, the model
infers a hidden state (normal, father isodisomy,
mother isodisomy, father heterodisomy and mother heterodisomy).
biocViews:
Software,
HiddenMarkovModel
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.1
Depends:
R (>= 4.4.0)
Imports:
HMM,
utils,
VariantAnnotation,
GenomicRanges,
S4Vectors,
IRanges,
stats,
methods
Suggests:
knitr,
testthat (>= 2.1.0),
BiocStyle,
rmarkdown,
markdown,
karyoploteR,
regioneR,
dplyr
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
URL:https://github.com/martasevilla/UPDhmm
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martasevilla
lshep
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