bioc-issue-bot
commented
3 months ago Hi @samWieczorek
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: omXplore
Type: Package
Title: Vizualization tools for 'omics' datasets with R
Version: 0.99.1
Authors@R:
c(person(given = "Samuel",
family = "Wieczorek",
email = "samuel.wieczorek@cea.fr",
role = c("aut","cre"),
comment = c(ORCID="0000-0002-5016-1203")),
person(given = "Thomas",
family ="Burger",
email = "thomas.burger@cea.fr",
role = c("aut")),
person(given = "Enora",
family = "Fremy",
email = "enora.fremy@cea.fr",
role = c("ctb"))
)
Description: This package contains a collection of functions (written as
shiny modules) for the visualisation and the statistical analysis of omics
data. These plots can be displayed individually or embedded in a global
Shiny module.
Additionaly, it is possible to integrate third party modules to the main
interface of the package omXplore.
License: Artistic-2.0
Depends:
R (>= 4.3.0), methods
Imports:
shiny,
MSnbase,
PSMatch,
SummarizedExperiment,
MultiAssayExperiment,
shinyBS,
shinyjs,
shinyjqui,
DT,
RColorBrewer,
gplots,
highcharter,
visNetwork,
tibble,
grDevices,
stats,
utils,
htmlwidgets,
vioplot,
graphics,
FactoMineR,
dendextend,
dplyr,
factoextra,
tidyr
Suggests:
knitr,
rmarkdown,
BiocStyle,
testthat,
Matrix,
graph
biocViews:
Software,
ShinyApps,
MassSpectrometry,
DataRepresentation,
GUI,
QualityControl
NeedsCompilation: no
Collate:
'Infos_adjacencyMatrix.R'
'Prostar_1x.R'
'convert_to_mae.R'
'doc-data.R'
'external_apps_examples.R'
'get_pep_prot_CC.R'
'mae_accessors.R'
'metacell_utils.R'
'mod_colorLegend.R'
'mod_explore_graphs.R'
'modules.R'
'omXplore_cc.R'
'omXplore_corrmatrix.R'
'omXplore_density.R'
'omXplore_format_DT.R'
'omXplore_heatmap.R'
'omXplore_intensity.R'
'omXplore_pca.R'
'omXplore_plots_tracking.R'
'omXplore_tabExplorer.R'
'omXplore_variance.R'
'omXplore_view_dataset.R'
'palette.R'
'plot_boxplot.R'
'plot_heatmap.R'
'plot_pca.R'
'plot_violin.R'
'utils.R'
'zzz.R'
RoxygenNote: 7.3.1
Packaged: 2017-10-13 11:13:04 UTC; sw175264
Encoding: UTF-8
LazyData: false
URL: https://github.com/prostarproteomics/omXplore, https://prostarproteomics.github.io/omXplore/
BugReports: https://github.com/prostarproteomics/omXplore/issues
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
lshep
samWieczorek
vjcitn
Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor
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[x ] I have read the Bioconductor Package Submission instructions. My package is consistent with the Bioconductor Package Guidelines.
[x ] I understand Bioconductor Package Naming Policy and acknowledge Bioconductor may retain use of package name.
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[x ] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.
[x ] I am committed to the long-term maintenance of my package. This includes monitoring the support site for issues that users may have, subscribing to the bioc-devel mailing list to stay aware of developments in the Bioconductor community, responding promptly to requests for updates from the Core team in response to changes in R or underlying software.
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